Often, when logging into cPanel, databases are shown with zero sizes. To fix this issue, ssh to your server and open cPanel config:
# vi /var/cpanel/cpanel.config
Find and change this variable from 0 to 1:
# disk_usage_include_sqldbs=1
Restart cPanel:
# /etc/init.d/cpanel restart
Now, databases are included in the used disk size calculations and the correct numbers will be shown in cPanel. This directive is disabled by default to decrease server load, as such calculations may consume great amount of CPU.
Also, if there are still any problems with your statistics, try running the script:
# /scripts/update_db_cache
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